Hi Pete,
The way the Bosch ECU works is that you supply a "torque request" from the throttle pedal and the ECU decides where to put the throttle butterfly valve and all the other things such as injector time, etc. It basically decides what "charge" to put in the cylinders. I learnt that the Bosch Metronic system has this left foot braking thing where the ECU will honour your torque request via the throttle after you do it.
Has your battery been out at all or discharged? Has it been in the dealers for a service? The throttle body must be re-aligned if the battery has been disconnected - I think they normally disconnect the battery for a service. The Audi service guys don't even know what a TBA is

Anyway, my throttle body was out of alignment and didn't register 100%. My mates S8 4.2 was only opening to 87% and we calculated on a logged run that he only developed about 180 horse power ( calculated by the formula 80% of peak mass air flow - which was 220g/s)
The only way you can reset the Throttle Body Alignment is with something like the Vag-Com software. In total this cost me £30 for a cable and it works fine.
Also, the engine adaption ( learnt driving experience) can only be reset with the vag-com.
As a matter of interest since I reset the adaption and the TBA, it's a different car.
My mate has just "Revo"ed his Passat 2.0TDI and it's a lot faster now but could never touch the S4 - it's only got 4 cylinders
I would guess that your throttle body needs aligning. If you are anywhere near Newcastle you're more than welcome to pop in and have a go with the Vag-Com.
Regards, Chris.